Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
Autor
Hendriksen, Rene S.
Munk, Patrick
Njage, Patrick
Bunnik, Bram van
McNally, Luke
Lukjancenko, Oksana
Röder, Timo
Nieuwenhuijse, David
Karlsmose Pedersen, Susanne
Kjeldgaard, Jette S.
Kaas, Rolf S.
Clausen, Philip T. L. C.
Vogt, Josef K.
Leekitcharoenphon, Pimlapas
van de Schans, Milou G.M.
Zuidema, Tina
de Roda Husman, Ana M.
Rasmussen, Simon
Petersen, Bent
Amid, Clara
Cochrane, Guy
Sicheritz-Ponten, Thomas
Schmitt, Heike
Matheu Alvarez, Jorge R.
Aidara-Kane, Awa
Pamp, Sünje J.
Lund, Ole
Hald, Tine
Woolhouse, Mark
Koopmans, Marion
Vigre, Håkan
Petersen, Thomas N.
Aarestrup, Frank M.
Fecha
2019Resumen
Antimicrobial resistance (AMR) is a serious threat to global public health, but obtaining representative data on AMR for healthy human populations is difficult. Here, we use metagenomic analysis of untreated sewage to characterize the bacterial resistome from 79 sites in 60 countries. We find systematic differences in abundance and diversity of AMR genes between Europe/North-America/Oceania and Africa/Asia/South-America. Antimicrobial use data and bacterial taxonomy only explains a minor part of the AMR variation that we observe. We find no evidence for cross-selection between antimicrobial classes, or for effect of air travel between sites. However, AMR gene abundance strongly correlates with socio-economic, health and environmental factors, which we use to predict AMR gene abundances in all countries in the world. Our findings suggest that global AMR gene diversity and abundance vary by region, and that improving sanitation and health could potentially limit the global burden of AMR. We propose metagenomic analysis of sewage as an ethically acceptable and economically feasible approach for continuous global surveillance and prediction of AMR.
Fuente
Nature Communications, 10, 1124Link de Acceso
Click aquí para ver el documentoIdentificador DOI
doi.org/10.1038/s41467-019-08853-3Colecciones
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